species:   Rhsol
pid:       PID0617
parent:    Rhi-milR-119
paralog:   
locus:     KB317777.1:7095-7207
matures:   ['UCAUUCAAGGGAGCGGAACAA', 'CAUCCGUUCCUUUGAGUACU']
srr:       SRR1994877
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram KB317777.1:7095-7207

3 out of bounds
106 alignments
98 proper strand
71 stranded perfect matches

                 **************************                           *************************                  
CUUGGGAUUUCUCUCCAAGUCAUUCAAGGGAGCGGAACAAAACUACAACACACACAACAAGGAACUCCUUGCUAUCAUCCGUUCCUUUGAGUACUGGCAAACAUUUCUGGAAG
.((.(((.......(((.((.(((((((((((((((.....................(((((....)))))......))))))))))))))))))))........))).))..
-------------------UCAUUCAAGGGAGCGGAACAA------------------------------------------------------------------------- l=21 a=2 c
---------------------------------------------------------------------------CAUCCGUUCCUUUGAGUACU------------------ l=20 a=0 c*
-------------------UCAUUCAAGGGAGCGGAACAAAAC---------------------------------------------------------------------- l=24 a=52 ma
------------------------------------------------------------------------UAUCAUCCGUUCCUUUGAGUACU------------------ l=23 a=0 ma*

-----------------------UCAAGGGAGCGGAACAAAACa--------------------------------------------------------------------- l=21 a=5 
-----------------------UCAAGGGAGCGGAACAAAACUA-------------------------------------------------------------------- l=22 a=8 
-----------------------UCAAGGGAGCGGAACAAAACaA-------------------------------------------------------------------- l=22 a=1 
----------------------UUCAAGGGAGCGGAACAAAACa--------------------------------------------------------------------- l=22 a=1 
----------------------UUCAAGGGAGCGGAACAAAACUAu------------------------------------------------------------------- l=24 a=3 
---------------------uUUCAAGGGAGCGGAACAAAAC---------------------------------------------------------------------- l=22 a=1 
---------------------uUUCAAGGGAGCGGAACAAAACUA-------------------------------------------------------------------- l=24 a=1 
--------------------CAUUCAAGGGAGCGGAACAAAAC---------------------------------------------------------------------- l=23 a=1 
-------------------UCAUUCAAGGGAGCGGAACA-------------------------------------------------------------------------- l=20 a=1 
-------------------UCAUUCAAGGGAGCGGAACAA------------------------------------------------------------------------- l=21 a=2 (c)
-------------------UCuUUCAAGGGAGCGGAACAAA------------------------------------------------------------------------ l=22 a=2 
-------------------UCAUUCAAGGGAGCGGAACAAA------------------------------------------------------------------------ l=22 a=5 
-------------------UCAUUCAAGGGAGCGGAACAAAA----------------------------------------------------------------------- l=23 a=1 
-------------------UCAUUCAAGGGAGCGGAACAAAAC---------------------------------------------------------------------- l=24 a=52 (ma)
-------------------UCuUUCAAGGGAGCGGAACAAAAC---------------------------------------------------------------------- l=24 a=8 
-------------------UCAUUCAAGGaAGCGGAACAAAAC---------------------------------------------------------------------- l=24 a=1 
-------------------UCAUUCAgGGGAGCGGAACAAAAC---------------------------------------------------------------------- l=24 a=1 
-------------------UCAUUCAAGGGAGCGGAACAAcAC---------------------------------------------------------------------- l=24 a=1 
------------------aUCAUUCAAGGGAGCGGAACAAAAC---------------------------------------------------------------------- l=25 a=1 
-----------------AaUCAUUCAAGGGAGCGGAACAAAA----------------------------------------------------------------------- l=25 a=1 
--------------CCAAGUCAUUCAAGGGAGCGG------------------------------------------------------------------------------ l=21 a=1 

mb-01011
ax-1001011
ku-01
ss-111111101110
fn-111
